:orphan: 





.. _biolag_abs_base_fit:



Bioavailability and Lag
#######################

[Generated automatically as a Fitting summary]

Model Description
*****************


:Name: biolag_abs_base

:Title: Bioavailability and Lag

:Author: PoPy for PK/PD

:Abstract: 

| One compartment model absorption dosing with bioavailability and lag parameters.

:Keywords: identifiability; bioavailability; lag; dep_one_cmp_cl

:Input Script: :download:`biolag_abs_base_fit.pyml <biolag_abs_base_fit.pyml>`

:Diagram: 


.. thumbnail:: biolag_abs_base_fit.pyml_output/compartment_diagram.svg
    :width: 200px


Comparison
**********



Compare Main f[X]
=================


===============  ================  ==============  ============  =============
Variable Name      Starting Value    Fitted Value    Abs Change    Prop Change
===============  ================  ==============  ============  =============
f[KA]                      0.5000          1.0000        0.5000         1.0000
f[CL]                      1.0000          2.4714        1.4714         1.4714
f[V]                      15.0000         12.7971        2.2029         0.1469
f[BIO]                     0.5000          0.4497        0.0503         0.1007
f[LAG]                     1.0000          8.7958        7.7958         7.7958
===============  ================  ==============  ============  =============

Compare Noise f[X]
==================


===============  ================  ==============  ============  =============
Variable Name      Starting Value    Fitted Value    Abs Change    Prop Change
===============  ================  ==============  ============  =============
f[ANOISE_STD]              5.0000          0.8946        4.1054         0.8211
===============  ================  ==============  ============  =============

Compare Variance f[X]
=====================




Population simulated (sim) plots
================================


.. list-table:: 
    :width: 90%

    * - .. thumbnail:: images/fit_sim_grph_outputs/indOBS_vs_TIME/000001.svg
            :width: 200px
      - indOBS_vs_TIME

Outputs
*******



Final objective value
=====================

.. code-block:: pyml

    38.8670


which required 1.18 iterations and took 12.78 seconds

Fitted f[X] values (after fitting)
==================================


.. code-block:: pyml

    f[KA] = 1.0000
    f[CL] = 2.4714
    f[V] = 12.7971
    f[ANOISE_STD] = 0.8946
    f[BIO] = 0.4497
    f[LAG] = 8.7958



Fitted parameter .csv files
===========================


:Fixed Effects: :download:`fx_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/fx_params.csv>`

:Random Effects: :download:`rx_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/rx_params.csv>`

:Model params: :download:`mx_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/mx_params.csv>`

:State values: :download:`sx_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/sx_params.csv>`

:Predictions: :download:`px_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/px_params.csv>`

:Likelihoods: :download:`lx_params.csv (fit) <biolag_abs_base_fit.pyml_output/solN/lx_params.csv>`



Inputs
******


:Input Data: :download:`cx_obs_params.csv <cx_obs_params.csv>`


Starting f[X] values (before fitting)
=====================================


.. code-block:: pyml

    f[KA] = 0.5000
    f[CL] = 1.0000
    f[V] = 15.0000
    f[ANOISE_STD] = 5.0000
    f[BIO] = 0.5000
    f[LAG] = 1.0000

