# METHOD_OPTIONS

Type: dict_record

method options for plt_grph

Example:-

    METHOD_OPTIONS:
        py_module: grph

## py_module

Type: one_of(grph)

Python module required to process this script file

Example:-

    py_module: grph

# PARALLEL

Type: one_of_record

one of many possible servers

Example:-

    PARALLEL:
        SINGLE: {progress_bar_length: 0}

## SINGLE

Type: dict_record

single process server spec.

Example:-

    SINGLE:
        progress_bar_length: 0

### progress_bar_length

Type: int

Length of progress bar on screen (default=0, off)

Example:-

    progress_bar_length: 0

## MPI_WORKERS

Type: dict_record

MPI local server spec.

Example:-

    MPI_WORKERS:
        n_workers: auto
        cpu_load: 1.0
        progress_bar_length: 0

### n_workers

Type: int / auto

Number of workers to use on this machine, defaults to number of processors, but could be more or fewer.

Example:-

    n_workers: auto

### cpu_load

Type: float

Desired load on CPU as a decimal greater than 0.0 (0%) and less than or equal to 1.0 (100%)

Example:-

    cpu_load: 1.0

### progress_bar_length

Type: int

Length of progress bar on screen (default=0, off)

Example:-

    progress_bar_length: 0

# FILE_PATHS

Type: dict_record

file paths

Example:-

    FILE_PATHS:
        output_folder: auto
        log_folder: auto
        output_file_ext: ['svg']
        delete_old_files_flag: False
        solutions:
            initial_fit_ipred: sol0/solution.pyml
            final_fit_ipred: solN/solution.pyml

## output_folder

Type: output_folder / auto

Output folder - results of computation stored here

Example:-

    output_folder: auto

## log_folder

Type: output_folder / auto

Log folder - log files stored here

Example:-

    log_folder: auto

## output_file_ext

Type: list_of(pdf,png,svg)

Output file extension - determines graphical output file format.

Example:-

    output_file_ext: ['svg']

## delete_old_files_flag

Type: bool

Option to delete any existing files before running.

Example:-

    delete_old_files_flag: False

## solutions

Type: dict

Solutions to compare

Example:-

    solutions:
        initial_fit_ipred: sol0/solution.pyml
        final_fit_ipred: solN/solution.pyml

# DATA_FIELDS

Type: dict_record

data fields for popy.dat.fields object

Example:-

    DATA_FIELDS:
        type_field: TYPE
        id_field: ID
        time_field: TIME

## type_field

Type: str

Field name in data file that contains row type info, e.g. obs/dose etc

Example:-

    type_field: TYPE

## id_field

Type: str

Field name in data file that contains identity string for each data row e.g. obs/dose etc

Example:-

    id_field: ID

## time_field

Type: str

Field name in data file that contains time or event for each data row

Example:-

    time_field: TIME

# PREPROCESS

Type: verbatim

Code that preprocesses the input data. Use this to filter rows and create derived covariates.

Example:-

    PREPROCESS: |

# OUTPUT_GRAPHS

Type: list_record

List of graphs to output.

Example:-

    OUTPUT_GRAPHS:
        - COMB_SPAG_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']

        - SCATTER_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var_src: observed_data
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']
            dot_size: 12

        - RES_VS_X_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var_src: observed_data
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']
            dot_size: 12

        - WRES_VS_X_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var_src: observed_data
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']
            dot_size: 12

        - CWRES_VS_X_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var_src: observed_data
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']
            dot_size: 12

        - SPAG_GRPH:
            output_subdir: none
            graph_title: My rather excellent graph
            x_axis_label: TIME
            x_var: TIME
            x_scale: linear
            y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
            y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
            y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
            y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
            y_var_colour_list: ['b', 'g']
            y_var_symbol_list: ['-', '-']
            y_scale_list: ['linear', 'log']
            options_list: ['legend', 'grid', 'dose_lines']

## COMB_SPAG_GRPH

Type: dict_record

Plot data for all individuals one one graph.

Example:-

    COMB_SPAG_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']

## SCATTER_GRPH

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

    SCATTER_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var_src

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

    x_var_src: observed_data

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']

### dot_size

Type: int

Size of dots appearing in scatter plots

Example:-

    dot_size: 12

## RES_VS_X_GRPH

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

    RES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var_src

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

    x_var_src: observed_data

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']

### dot_size

Type: int

Size of dots appearing in scatter plots

Example:-

    dot_size: 12

## WRES_VS_X_GRPH

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

    WRES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var_src

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

    x_var_src: observed_data

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']

### dot_size

Type: int

Size of dots appearing in scatter plots

Example:-

    dot_size: 12

## CWRES_VS_X_GRPH

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

    CWRES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var_src

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

    x_var_src: observed_data

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']

### dot_size

Type: int

Size of dots appearing in scatter plots

Example:-

    dot_size: 12

## SPAG_GRPH

Type: dict_record

Plot data for all individuals on separate graphs.

Example:-

    SPAG_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']

### output_subdir

Type: output_folder

Destination subdirectory for these plots.

Example:-

    output_subdir: none

### graph_title

Type: str

Title of graph.

Example:-

    graph_title: My rather excellent graph

### x_axis_label

Type: str

x axis label text

Example:-

    x_axis_label: TIME

### x_var

Type: str

x axis variable name.

Example:-

    x_var: TIME

### x_scale

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

    x_scale: linear

### y_axis_label_list

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

### y_var_src_list

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

### y_var_list

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

### y_var_label_list

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

### y_var_colour_list

Type: list(str)

List of colours for y variable plot lines.

Example:-

    y_var_colour_list: ['b', 'g']

### y_var_symbol_list

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

    y_var_symbol_list: ['-', '-']

### y_scale_list

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

    y_scale_list: ['linear', 'log']

### options_list

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

    options_list: ['legend', 'grid', 'dose_lines']